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bioinformatics

This class was created by Brainscape user Chantal Fifield. Visit their profile to learn more about the creator.

By: Chantal Fifield
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Decks in this class (20)

sequencing & assembly
Stages of genome sequencing,
Pac bio,
Phred scores
17  cards
sequence assembly
Read number,
Assembly algorithms,
Greedy approach phrap
19  cards
genome annotation
Annotation,
Process of annotation,
Simple metrics
10  cards
ab initio gene prediction
Bacteria vs eukaryotes,
Gene finding programs,
Prodigal
7  cards
analysis of gene expression
Focus on mrna,
Experimental considerations,
Microarray process
17  cards
analysis of gene expression 2
Identification of differentially ...,
Fold change,
Fold change advantages
12  cards
sequence alignment
Bioinformatics resources,
Protein evolution,
Alignment features
17  cards
database searching
Blast,
Blast vs psiblast,
Blast output
18  cards
protein feature analysis
Membrane proteins,
Transmembrane helices,
Methods to identify tm regions
10  cards
protein structure prediction
Motivation for structure prediction,
Casp,
Ab initio energy calculations
23  cards
ab initio structure prediction
Ab initio methods,
Rosetta,
Rosettaidentification of good tri...
11  cards
drug design
Drug discovery pipeline,
Hit,
Lead
17  cards
computer-aided drug design
Ligand based methods,
Qsar,
Use of qsar models
23  cards
machine learning
Machine learning,
Uses of machine learning,
Bayesian framework
21  cards
genome variation
Changes at the dna level,
Changes at the rna level,
Changes at protein level
25  cards
single cell transcriptomics
Heterogeneity in cell populations,
Limitations of bulk assays,
Process of sct
25  cards
phylogenetics
Phylogenetics,
Phylogenetic trees,
Distance
10  cards
prediction of protein function
Sequence similarity,
Msas,
Pml
13  cards
evolution of protein function
Sequence similarity networks,
Protein families,
M13 peptidases
14  cards
eukaryotic gene prediction
Position weight matrices,
Intron splice sites,
Hidden markov models
14  cards

More about
bioinformatics

  • Class purpose General learning

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  • 288 flashcards
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Decks: Computing, Data, Variant Analysis Annotation, And more!
bioinformatics
  • 9 decks
  • 344 flashcards
  • 3 learners
Decks: Genome Assembly, Genome Annotation, Rna Seq, And more!
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