I13 Flashcards

1
Q

What is antigenic variation?

A

display of new antigens by a pathogen that are not recognized by immune responses formed in response to previous infectionenables the pathogen to evade pre-formed memory immune responses

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2
Q

What kind of antigenic variation does Strep. pneumo use?

A

capsular variationStreptococcus pneumonia uses an antigenic variation mechanism that is fairly standard in the microbe world. There are 84 distinct serotypes of S. pneumo which all differ in the structure of their capsular polysaccharides.When one serotype of S. pneumo infects a host, the host will produce a capsular polysaccharide-specific antibody response that will clear the infection and leave the host immune to that serotype.However, the host is not resistant to any of the other 83 serotypes of S. pneumo. Upon infection with any of the other serotypes, the preformed immune response to the 1st serotype cannot mediate clearance, and the host has to produce a new immune response to the different serotype of capsular polysaccharide.Therefore, S. pneumo can cause 84 distinct infections in the same host that will result in acute infection and a chance for transmission before the host can produce an acquired B cell response.

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3
Q

Influenza virus uses two different forms of antigenic variation. What is one?

A

ANTIGENIC DRIFT (introduction of point mutations that result in minor alterations of the antigenicity of a particular protein). Influenza virus makes two surface proteins (neuraminadase and hemagglutinin) that are the primary targets of antibody responses that can protect the host from this virus (once the immune response is produced). The antibodies neutralize the virus by binding to these surface proteins and interfering with their ability to bind to their host cell receptors.During the replicative cycle of flu in another person, or in a non-human host such as a pig or fowl, the hemagglutinin and/or neuraminadase accrue point mutations that alter the determinants that were recognized by protective antibody responses in human hosts.Upon infection of another person that had already experienced the flu, this new virus that has undergone antigenic variation (drift) can evade that person’s pre-formed anti-flu antibodies and cause a symptomatic infection that will allow transmission of the virus to other hosts.Typically, this type of antigenic variation in influenza results in a new pandemic that is not terribly serious, probably because many of the determinants recognized by flu-specific T cells in previously infected/immune patients have not been altered, so generating a new B cell response is very efficient and happens relatively quickly.

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4
Q

What is the second form of antigenic variation employed by Influenza virus?

A

ANTIGENIC SHIFTInfluenza virus has a segmented genome that has either 7 or 8 segments of ssRNA. During co-infection of a non-human host (pig or fowl, typically), two different viruses can undergo their replicative cycle simultaneously in the same cell.As two flu viruses replicate simultaneously inside the same cell, it is possible for the resulting virions to be packaged with a shuffled version of the genome segments.The resulting virus now may express a completely different version of either the hemagglutinin or neuraminidase surface proteins. This more completely nullifies any previous immune response a person has made to a previous strain of influenza because not only are the B cell determinants different, so are many or even most of the T cell determinants.Therefore, the resulting antigenically shifted virus can cause a new pandemic that causes much more severe disease than a viral strain that arose via antigenic drift.

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5
Q

How do Trypanasomes (insect-borne protozoa that replicate in extracellular tissue spaces in the body; they cause sleeping sickness) employ antigenic variation?

A

These pathogens have genes that encode over 1000 distinct “variant-specific glycoproteins” using a sort of cassette system. During any trypanosome infection, most of the newly generated trypanosomes will express the predominant VSG (in this example, VSGa).Once the host has begun to make immune responses directed at VSGa……some of the daughter trypanosomes begin to express a different VSG protein (in this case, VSGb). Now, the new VSG-bearing trypanosomes are able to escape the pre- formed immune response of the host, and their numbers increase in the host until the host makes a new VSGb-specific immune response.Now the trypanosome switches VSG expression again, allowing the bug to escape the preformed immune response, and the whole cycle repeats again.This is why African sleeping sickness is a chronic episodic condition. Ultimately, the inflammation caused by the recurrent immune responses and immune complex formation/clearance causes damage to host tissues, including neural tissue, and ultimately results in coma.

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6
Q

What is latency?

A

a non-replicative state that some viruses can achieve in host cells. The viral genome integrates into host cell DNA (either chromosomal or episomal DNA). While in this state, there is no way for the immune system to recognize infected host cells.usually, viral infections are characterized by rapid production of viral proteins (for replication); some of these proteins are processed, and fragments of them are displayed on the surface bound to MHC class I molecules of the infected cell, where they can be recognized by antigen-specific effector CTLs (the cell is killed)• during latency, the virally-infected cells cannot be eliminated by CTLs because there are no viral antigens (peptides) to flag the presence of viral infection

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7
Q

What causes oral herpes lesions?

A

This is caused by herpes virus replication along the sensory neurons that serve the mouth. The virus initially infects the epithelium, but is travels up the nerve and integrates into host episomal DNA in nerve cells in the trigeminal ganglion.During the primary infection, viral replication causes a lesion near the mouth as it travels up the nerve serving that tissue, and it enters a latency stage in the trigeminal ganglion.During the latency phase, the viral genome remains integrated into episomal DNA in the trigeminal ganglion, and because there are very few virus-derived peptides, the immune system (CTLs) has no method of identification of these infected cells. (Also, neurons express very low levels of MHC class I molecules, which makes it harder for CTLs to recognize infected neurons. This is an important feature of neurons; since they cannot be regenerated, the lack of MHC class I molecules helps to prevent unnecessary killing of the vital cells. Lack of MHC class I makes neurons extremely susceptible to persistent infections)Eventually some stressor (sunlight, mental stress, etc.) causes reactivation of the viral replicative cycle. The virus replicates and travels down the sensory nerve into the overlying epithelium, and immune responses again control the infection by killing the infected epithelial cells (leaving cold sores).This cycle can happen over and over for the rest of the patient’s life. The immune system likely never clears these types of infections.

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8
Q

What is another latent viral infection type?

A

Latent chickenpox (varicella-Zoster virus) that has been reactivated, a condition known as the shingles.

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9
Q

Where does VZ remain latent after an initial chicken pox infection?

A

VZ remains latent after chickenpox infection in the dorsal root ganglia that serve one side of the trunk or one side of the face. THIS IS WHY when reactivation occurs, the lesions are typically confined to that side of the trunk or face, often from front midline to back midline.

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10
Q

Can people have shingles more than once?

A

It has been thought for some time that only one reactivation of this latent virus was possible, but there is mounting evidence that one person can have the shingles more than once. The experience is quite painful.

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11
Q

How does the herpes simplex subvert the immune system? Which part of the immune system?

A

Humoral: It has virally encoded Fc receptors that block effector functions of antibodies bound to infected cells It also has virally encoded complement receptors that block complement-mediated effector pathways Blocking of antigen processing and presentation: Inhibition of MHC class I up regulation by IFN-y and inhibition of peptide transfer by TAP

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12
Q

How does cytomegalovirus subvert the immune system? Which part of the immune system?

A

Humoral: It has virally encoded Fc receptors that block effector functions of antibodies bound to infected cells Inhibition of inflammatory response: It encodes a chemokine receptor homolog that sensitizes infected cells to effects of some cheekiness (advantage to virus unknown)Blocking of antigen processing and presentation: Inhibition of MHC class I up regulation by IFN-y

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13
Q

How does vaccinia subvert the immune system? Which part of the immune system?

A

Humoral: virally encoded complement control protein hat inhibits complement activation fo infected cells Inhibition of inflammatory response: Virally encoded cytokines receptors (e.g. IL-1, TNF-a receptor homologs) that block the effects of cytokines by inhibiting their interaction with host receptors AND protection from NFkB activation by short sequences that mimc TLRs that block the inflammatory responses elicited by IL-1 or bacterial pathogens

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14
Q

How does Epstein-Barr virus subvert the immune system? Which part of the immune system?

A

Inhibition of inflammatory response: viral inhibition of adhesion molecule expression (e.g. LFA-3, ICAM-1) that blocks adhesion of lymphocytes to infected cells Immunosuppression of host: virally encoded cytokines homolog of IL-10 that inhibits TH2 production

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15
Q

How does the surface protein US2 of human cytomegalovirus cause subversive effects on the immune response?

A

Targets HLA class I molecules to the proteasome by transporting them to the cytosol

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16
Q

How does the surface protein US3 of human cytomegalovirus cause subversive effects on the immune response?

A

Retains HLA class I in the ER by blocking tapasin function

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17
Q

How does the surface protein US6 of human cytomegalovirus cause subversive effects on the immune response?

A

Inhibits TAP ATPase activity and function

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18
Q

How does the surface protein US10 of human cytomegalovirus cause subversive effects on the immune response?

A

Binds HLA class I and delays its departure from the ER to the cell surface

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19
Q

How does the surface protein US11 of human cytomegalovirus cause subversive effects on the immune response?

A

Targets newly synthesized HLA class I heavy chains form degradation in the cytoplasm

20
Q

How does the surface protein US16 of human cytomegalovirus cause subversive effects on the immune response?

A

Inhibits NK-cell recognition of infection cels by binding to the ULBP ligands for NKG2D

21
Q

How does the surface protein US18 of human cytomegalovirus cause subversive effects on the immune response?

A

MHC class I heavy chain homolog that binds the NK-cell receptor LILRB1

22
Q

How does the surface protein US40 of human cytomegalovirus cause subversive effects on the immune response?

A

The leader peptide of IL40 binds to HLA-E and subverts the ability of CD94:NKG2A to monitor HLA-A, -B, and -C expression

23
Q

How does the surface protein US83 of human cytomegalovirus cause subversive effects on the immune response?

A

Blocks access to the proteasome and the generation of peptides for binding MHC class I

24
Q

How does the surface protein US142 of human cytomegalovirus cause subversive effects on the immune response?

A

Down regulates the expression of MIC-A and MIC-B ligands for NKG2D

25
Q

What are superantigens?

A

There are several bacterial and viral pathogens that produce super antigens. (Ex. staphylococcal bacteria produce toxins (staphylococcal enterotoxins and toxic shock syndrome toxin-1) act as superantigens)These proteins are able to crosslink the MHC class II molecule to the T cell receptor in a non-specific way, by binding simultaneously to the outer surfaces of the MHC class II alpha chain and the beta chain of the T cell receptor. This non-specific interaction results in a psuedo-activation of T cells (between 1-20% of the repertoire) that produces a cytokine storm that disregulates normal immune responses (mechanism unsure).However, this can cause systemic toxicity that closely resembles septic shock.

26
Q

Where do superantigens bind specifically?

A

outer surfaces of the MHC class II alpha chain and the beta chain of the T cell receptor each superantigen can only bind to a few of the many different products of the Vβ gene segments (20-50 in humans), and therefore, can only stimulate between 2-20% of all T cells (that is a huge number of T cells) binding of superantigen to both MHC class II and TCR of a T cell (simultaneously) does not prime an antigen- specific immune response; instead, it causes massive production of cytokines by CD4 T cells• these cytokines cause systemic toxicity (can kill the patient) and/or suppression of immune responses

27
Q

T or F. It is a lentivirus (a type of retrovirus)

A

T, so it encodes a reverse transcriptase enzyme and is surrounded by an envelopeHIV uses its genome as efficiently as any pathogen because it uses all three reading frames and it also uses alternative splicing to create additional transcripts.

28
Q

What else does HIV encode?

A

It also encodes an integrase protein (p32), and two surface-exposed proteins (the surface unit gp120 and the transmembrane protein gp41 (these are the breakdown products of gp160)).

29
Q

Describe the HIV life cycle?

A

HIV takes advantage of our immune system from the start by utilizing a chemokine receptor and CD4 as its cell surface receptors. This allows the virus to target naive CD4 T cells for infection. When its envelope fuses with the host CD4 T cell (via gp120:gp41), the viral genome, the reverse transcriptase, and the integrase are dumped into the cytoplasm of the cell. The reverse transcriptase copies the viral RNA to create a double-stranded provirus that is then integrated into host cell DNA (with the help of the integrase).Because the reverse transcriptase has no proof-reading ability, it is a very error-prone enzyme. This gives rise to a high rate of antigenic variation.Once inside the T cell, T-cell activation induces some transcription of the provirus. RNA transcripts are then spliced to allow synthesis of the early proteins Tat and Rev. Tat amplifies transcription of the viral RNA. Rev increases transport of RNA products (pg160, Pol, and Gag) to the cytoplasm. Gag, Pol, and pg160 help assemble the viral RNA into visions which bud from the cell)The virus is cytopathic, so at the end of its replicative cycle it kills the host cell. Ultimately, because its primary host cells are CD4+ T cells, CD4 cell are depleted.

30
Q

What is the primary host cell of HIV?

A

naive CD4 T cells It is also important to point out that HIV takes advantage of human behavior for its transmission. It can be transmitted blood-to blood via transfusion or sharing of needles. Most importantly, it can be transmitted by one behavior that will never change: sexual transmission.

31
Q

The host makes tremendous immune responses to HIV, and those responses control the viral burden for long periods of time. The reason that the immune responses cannot clear the infection are two- fold:

A

(1) Antigenic variation that results because of the error rate of reverse transcriptase.(2) Latency: HIV proviruses integrate into host DNA and remain latent for long periods of time.infected individuals make potent B cell and T cell mediated anti-HIV responses. However, they do not cleat the infection and may actually help the virus evolve by providing selective pressure

32
Q

Over time, CD4 T cells are slowly depleted, and once they reach a threshold low level, the patient is no longer able to control opportunistic infections and displays essentially a SCID phenotype.The most important part of this from the virus’s point of view is that the host usually lives for a long time in a mostly healthy state (mean asymptomatic time=~10 years), affording the virus opportunity to be transmitted to potentially many new hosts.

A

Over time, CD4 T cells are slowly depleted, and once they reach a threshold low level, the patient is no longer able to control opportunistic infections and displays essentially a SCID phenotype.The most important part of this from the virus’s point of view is that the host usually lives for a long time in a mostly healthy state (mean asymptomatic time=~10 years), affording the virus opportunity to be transmitted to potentially many new hosts.

33
Q

What are some of the opportunistic parasite infections that are experienced by AIDS patients?

A

Toxoplasma species, Cryptosporidium species, Leishmania species, and Microsporidium species

34
Q

What are some of the opportunistic bacterial infections that are experienced by AIDS patients?

A

Mycobacterium TB, Mycobacterium avium intracellulare, Salmonella species

35
Q

What are some of the opportunistic fungal infections that are experienced by AIDS patients?

A

Pneumocystis carinii, Candida species, Cyrptococcus neoformans, Histoplasma capsulatum

36
Q

What are some of the opportunistic viral infections that are experienced by AIDS patients?

A

Herpes, Cytomegalovirus, Varicella-zoster

37
Q

T or F. HIV utilizes antigenic drift, latency, and induction of acquires immunodeficiency very effectively.

A

T. Because it utilizes these mechanisms so effectively, HIV is considered a nearly perfect pathogen.

38
Q

Notes on Epstein Barr virus.

A

Epstein-Barr Virus (EBV): causes cold-like symptoms in children, but causes infectious mononucleosis is adolescents and adults upon initial infection.the mononucleosis form of disease is characterized by B cell becoming infected and then proliferating (lots of new virus produced), leading to activation of T cells. Ultimately, infection is controlled by CD8 effector cells that kill infected B cells.o EBV does become latent by inserting its genome into host DNAo reactivation rarely causes disease symptoms in immunocompetent people

39
Q

Why can Mycobacterium tuberculosis survive inside of macrophages?

A

It is taken up by macrophages, but the bacterium prevents phagosome-lysosome fusion, enabling the bacterium to survive inside the phagocyte

40
Q

What is the causative agent of Leprosy?

A

Mycobacterium leprae. M. leprae either causes suppression of cell-mediated acquired responses, or induces a very potent cell-mediated anti-bacterialresponse

41
Q

What are the two forms of leprosy?

A

1) lepromatous leprosy2) tuberculoid leprosy

42
Q

Describe lepromatous leprosy.

A

cell-mediated immunity is profoundly depressed, and infection is not controlled • bacteria is highly infectious and replicates freely in macrophages• infection is disseminated widely in the body• hypergammaglobulinemia (elevated levels of immunoglobulins or antibodies in the circulation) • low or absent T cell responsiveness; no response to M. leprae antigens• the immunosuppression leaves the host in an anergic state; cannot respond to any antigens

43
Q

Describe tuberculoid leprosy.

A

potent cell-mediated immunity with macrophage activation which controls but does not eradicate infection • bacteria is not very infectious and are present at low to detectable levels• granulomas and local inflammation are observed• normal serum levels of immunoglobulins is observed• normal T cell responsiveness, and specific responsiveness to M. leprae antigensthe difference in the two forms of leprosy might lie in a difference in the ratio of TH1 to TH2 cells, and is therefore thought to be caused by cytokines

44
Q

What is seroconversion?

A

the phase of an immune response when antigen-specific antibody production is 1st detectable. Seroconversion of HIV occurs between 2-6 weeks post-infection. The initial immune response that is observed is seroconversion; antibody specific for the envelope protein (gp120) and the core protein (p24) are easily detectable within 4-8 weeks of initial infection. T cell-mediated immunity is also observed very early in infection, and persists throughout the asymptomatic phase of disease,and begins to wane during the AIDS phase of disease

45
Q

T or F. HIV also rapidly acquires resistance to anti-viral drugs.

A

T.  immediately following administration of protease inhibitors, viral loads decrease rapidly and CD4 cell numbers increase; within a couple of weeks however, mutant viruses begin to appear and CD4 cell numbers begin to decrease again resistance to zidovudine (AZT, a reverse transcriptase inhibitor) takes months to develop because several (3-4) mutations in the reverse transcriptase gene are required to confer resistance