regulating gene expression Flashcards

(50 cards)

1
Q

what are housekeeping genes

A

genes that code for proteins that are constantly required such as enzymes

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2
Q

what are tissue specific genes

A

genes that code for proteins that are only required by certain cells at certain times to carry out a short lived response such as peptide hormones

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3
Q

when can genes be turned on or off

A

depends on when they are needed

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4
Q

why is it important that genes are only expressed when products are needed

A

it prevents vital resources being wasted

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5
Q

why is gene regulation required for multicellular organisms

A

so they can respond to changes in their internal and external environment and so their cells can specialise and work in a coordinated way

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6
Q

what are 4 stages of gene regulation

A
  • transcriptional = genes can be turned on or off
  • post-transcriptional = mRNA can be modified which regulates translation and the types of proteins produced
  • translational = can be stopped/started
  • post-translational = proteins can be modified after synthesis which changes their function
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7
Q

what is DNA wound around that makes it packed inside the nucleus (since its too long)

A

histone proteins

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8
Q

what is DNA/histone complex called

A

chromatin

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9
Q

what is heterochromatin

A

tightly wound DNA causes chromsomes to be visible during cell division

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10
Q

what is euchromatin

A

loosely wound DNA present during interphase.

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11
Q

why is transcription of genes not possible when DNA is tightly wound

A

RNA polymerase cant access the gene

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12
Q

why can the genes in euchromatin be transcribed

A

RNA polymerase can access the gene

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13
Q

why does protein synthesis not occur during cell division but occur during interphase

A
  • ensures proteins necessary for cell division are synthesised in time.
  • prevents complex and energy consuming protein synthesis from occuring when cells are actually dividing
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14
Q

how does DNA coil around histones

A

histones are positively charged and DNA is negatively charged due to their phosphate groups

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15
Q

how can histones be modified

A

to increase/decrease degree of packing

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16
Q

what does acetylation and phosphorylation do

A

it reduces the positive charge on the histones making them more negative - DNA coils less tightly allowing certain genes to be transcribed
heterochromatin
–>euchromatin

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17
Q

what does methylation do

A

mkaes the histone proteins hydrophobic so they bind more tightly to eachother causing DNA to coil more tightly preventing transcription of genes
euchromatin –> heterochromatin

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18
Q

what is epigenetics

A

controlling gene expression by modifying DNA

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19
Q

what are transcription factors

A

proteins or non coding RNA that act in the nucleus to control which genes in a cell are turned on or off. they slide along part of a DNA molecule and bind to their specific promoter regions. they aid/inhibit attachment of RNA polymerase to DNA and activate or suppress transcription of the gene

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20
Q

what is the difference between structural and regulatory genes

A

structural genes encode protein or RNA that build cell structures or act as functional enzymes.
regulatory genes encode proteins that control the expression of other genes

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21
Q

what is an operon

A

a group of genes that are under the control of the same regulatory mechanism and are expressed at the same time.

22
Q

why is an operon common in prokaryotes

A

due to its smaller and simpler genome

23
Q

why is an operon an efficient way of saving resources

A

if certain gene products arent needed then all of the genes involved in their production can be switched off

24
Q

what is the preffered substrate of E.coli and what can be used instead if its in short supply

A

glucose. if in short supply lactose is used instead

25
what is the lac operon
a group of 3 genes involved in lactose metabolism - lac Z, lac Y and lac A
26
what does lac Z code for
beta galactosidase
27
what does lac Y code for
lactose permease
28
what does lac A code for
transacetylase
29
what is the name of the regulatory gene located near the operon and what does it code for
lac I codes for a repressor protein that prevents the transcription of structural genes in the absense of glucose
30
what does the repressor protein bind to
operator - close to structural genes
31
what does the binding of the repressor protein to the operator prevent
RNA polymerase from binding to DNA and beginning transcription
32
what is the promoter
the section of DNA that is the binding site for RNA polymerase
33
what happens when lactose is present
it binds to the repressor protein causing it to change shape so it can no longer bind to the operator. RNA polymerase can bind to the promoter, the 3 structural genes are transcribed and the enzymes are synthesised
34
why does the rate of transcription need to be increased when metabolising lactose
to produce the required quantity of enzymes needed to metabolise lactose
35
how can rate of transcription of lactose metabolising genes be increased
when cAMP receptor protein binds to lac operon
36
what does transport of glucose into E.coli do to cAMP levels
decreases it therefore reducing transcription of genes
37
what will be metabolised if glucose and lactose are BOTH present
glucose
38
what happens in post-transcriptional/pre-translational control
RNA is edited and processed
39
what is the product of transcription and what must happen before it enters the ribosome for translation
a precursor molecule called pre-mRNA that needs to be modified to mature RNA
40
what is the difference between introns and exons and are they both transcribed
both are transcribed to form part of the pre-mRNA. introns are non coding, exons are coding
41
what happens to the introns and exons on pre-mRNA
they undergo RNA splicing in the nucleus. introns are removed and exons are joined together. endonuclease enzymes are involved. the introns can encode some proteins or may become short non coding lengths of RNA involved in gene regulation
42
what is added to the 3' end and 5' end of premRNA and what is its purpose
a cap (modified nucleotide) is added to the 5' end and a tail (long chain of adenine nucleotides) is added to the 3'end it helps stabilise mRNA and delay degradation in the cytoplasm. the cap aids binding of the mRNA to the ribosome
43
how is RNA edited and why is this useful
mRNA sequence can be changed through base addition, deletion or substitution. has the same effect as point mutations resulting in synthesis of different proteins which may have different functions. this increases the range of proteins produced from a single mRNA molecule of a gene
44
what is the purpose of translational control
regulates protein synthesis
45
what happens in translational control
-degradation of mRNA - the more resistant the molecule the longer itll last in the cytoplasm and the greater quantity of protein synthesised -binding of inhibitory proteins to mRNA prevents it binding to ribosomes and prevents protein synthesis -activating initiation factors which aid binding of mRNA to ribosomes
46
what are protein kinases
enzymes that catalyse the addition of phosphate groups to proteins - changes tertiary structure and function of a protein. regulates cell activity and often activated by cAMP
47
what happens in post translational control
proteins are activated by cAMP
48
how are proteins activated by cAMP
- signalling molecule binds to receptor on target cell membrane. - activates transmembrane proteins - activates G protein - activates adenylyl cyclase - ATP --> cAMP - activates protein kinases - catalyses phosphorylation of proteins and hydrolyses ATP - many enzymes are activated or another protein phosphorylated - enters nucleus acting as a transcription factor
49
what happens to the proteins that are synthesised
they are modified
50
how are proteins modified
- adding non-protein groups (carbohydrates, lipids, phosphates) - modifying amino acids by formation of bonds e.g. disulfide bridges - folding or shortening of proteins - modification by cAMP