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*m seqbioinf

This class was created by Brainscape user Stevie Davies. Visit their profile to learn more about the creator.

By: Stevie Davies
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Decks in this class (15)

Linux stuff
1 login to cluster account on a p...,
Login to cluster account if your ...,
From your own laptop
7  cards
1. Intro
Terms and concepts prerequisites ...,
Explain sanger sequencing,
Explain illumina sequencing
7  cards
2. Big data
How to improve a task memory requ...,
Most realistic time complexity fo...,
Define time complexity
26  cards
3. Genome evolution
1  cards
4. NGS: Assembly
Online databases uniprot sprot vs...,
Online databases uniprot,
Online databases genbankeg arabid...
48  cards
5. Genome annotation
Repeats movile elements in genome...,
Two types of genome annotation,
What is structural genome annotation
35  cards
6. NGS: read mapping
What is the similarity difference...,
What is read mapping aka,
What is reference bias
30  cards
7. pw, DP
What is the difference between si...,
Can homology be observed,
Comparative sequence analysis sta...
35  cards
8. BLAST
What pairwise alignment approache...,
Dynamic programming approaches fo...,
What are two heuristics for align...
52  cards
9. MSAs
What are the two different applic...,
Comparative sequence analysis wha...,
One sequence vs many sequences fi...
47  cards
10. HMMs
What is a sequence logo,
What is meant by statistical mode...,
What are the applications of stat...
45  cards
12 | Phylogenetics I
Unrooted vs rooted phylogeny,
What is an optimal alignment for ...,
Define positional homology and ph...
39  cards
13 | Phylogenetics II
What are the types of character b...,
What is the basic concept and the...,
In character based methods what d...
29  cards
14 | Large scale analyses
Define population genetics,
Define phylogenomics,
What is molecular genetics genomi...
34  cards
Old exam questions
Exam question what is a scaffold ...,
Exam question how to use hamilton...,
Maker pipeline method for gene pr...
17  cards

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*m seqbioinf

  • Class purpose General learning

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